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public 01:34:44

Luis Bonilla : Bifurcation theory of swarm formation

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In nature, insects, fish, birds and other animals flock. A simple two-dimensional model due to Vicsek et al treats them as self-propelled particles that move with constant speed and, at each time step, tend to align their velocities to an average of those of their neighbors except for an alignment noise (conformist rule). The distribution function of these active particles satisfies a kinetic equation. Flocking appears as a bifurcation from an uniform distribution of particles whose order parameter is the average of the directions of their velocities (polarization). This bifurcation is quite unusual: it is described by a system of partial differential equations that are hyperbolic on the short time scale and parabolic on a longer scale. Uniform solutions provide the usual diagram of a pitchfork bifurcation but disturbances about them obey the Klein-Gordon equation in the hyperbolic time scale. Then there are persistent oscillations with many incommensurate frequencies about the bifurcating solution, they produce a shift in the critical noise and resonate with a periodic forcing of the alignment rule. These predictions are confirmed by direct numerical simulations of the Vicsek model. In addition, if the active particles may choose with probability p at each time step to follow the conformist Vicsek rule or to align their velocity contrary or almost contrary to the average one, the bifurcations are of either period doubling or Hopf type and we find stable time dependent solutions. Numerical simulations demonstrate striking effects of alignment noise on the polarization order parameter: maximum polarization length is achieved at an optimal nonzero noise level. When contrarian compulsions are more likely than conformist ones, non-uniform polarized phases appear as the noise surpasses threshold.

public 01:39:36

Pedro Saenz : Spin lattices of walking droplets

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Understanding the self-organization principles and collective dynamics of non-equilibrium matter remains a major challenge despite considerable progress over the last decade. In this talk, I will introduce a hydrodynamic analog system that allows us to investigate simultaneously the wave-mediated self-propulsion and interactions of effective spin degrees of freedom in inertial and rotating frames. Millimetric liquid droplets can walk across the surface of a vibrating fluid bath, self-propelled through a resonant interaction with their own guiding wave fields. A walking droplet, or `walker, may be trapped by a submerged circular well at the bottom of the fluid bath, leading to a clockwise or counter-clockwise angular motion centered at the well. When a collection of such wells is arranged in a 1D or 2D lattice geometry, a thin fluid layer between wells enables wave-mediated interactions between neighboring walkers. Through experiments and mathematical modeling, we demonstrate the spontaneous emergence of coherent droplet rotation dynamics for different types of lattices. For sufficiently strong pair-coupling, wave interactions between neighboring droplets may induce local spin flips leading to ferromagnetic or antiferromagnetic order. Transitions between these two forms of order can be controlled by tuning the lattice parameters or by imposing a Coriolis force mimicking an external magnetic field. More generally, our results reveal a number of surprising parallels between the collective spin dynamics of wave-driven droplets and known phases of classical condensed matter systems. This suggests that our hydrodynamic analog system can be used to explore universal aspects of active matter and wave-mediated particle interactions, including spin-wave propagation and topologically protected dynamics far from equilibrium.

public 01:34:49

Camille Scalliet : When is the Gardner transition relevant?

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The idea that glasses can become marginally stable at a Gardner transition has attracted significant interest among the glass community. Yet, the situation is confusing: even at the theoretical level, renormalization group approaches provide contradictory results on whether the transition can exist in three dimensions. The Gardner transition was searched in only two experimental studies and few specific numerical models. These works lead to different conclusions for the existence of the transition, resulting in a poor understanding of the conditions under which a marginally stable phase can be observed. The very relevance of the Gardner transition for experimental glasses is at stake.

We study analytically and numerically the Weeks-Chandler-Andersen model. By changing external parameters, we continuously explore the phase diagram and regimes relevant to granular, colloidal, and molecular glasses. We revisit previous numerical studies and confirm their conclusions. We reconcile previous results and rationalise under which conditions a Gardner phase can be observed. We find that systems in the vicinity of a jamming transition possess a Gardner phase. Our findings confirm the relevance of a Gardner transition for colloidal and granular glasses, and encourage future experimental work in this direction. For molecular glasses, we find that no Gardner phase is present, but our studies reveal instead the presence of localised excitations presumably relevant for mechanical and vibrational properties of glasses.

public 01:39:37

Andrew D Bragg : Lagrangian irreversibility and inversions in 3 and 2 dimensional turbulence

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Studying how small inertial particles suspended in turbulent flows move relative to each other provides fundamental insights into their transport, mixing and collisions. These insights are crucial for tackling diverse problems ranging from droplet growth in warm clouds, to planetesimal formation through collisional aggregation in turbulent protoplanetary nebula. A deeper understanding of the relative motion of the particles can be obtained by investigating both their forward-in-time (FIT) and backward-in-time (BIT) dispersion. When FIT and BIT dispersion are different it signifies irreversibility, and since FIT and BIT dispersion are related to different problems, understanding the irreversibility is of fundamental and practical importance.
I will present new theoretical arguments and asymptotic predictions, along with results from Direct Numerical Simulations (DNS) of the governing equations, to show that inertial particle dispersion can be very strongly irreversible in turbulence, with BIT being much faster than FIT dispersion in 3-dimensional turbulence. The results also show that inertial particles can disperse much faster than fluid (interialess) particles. I will also present arguments, confirmed by DNS results, that in 2-dimensional turbulence the nature of the irreversibility and the direction of the particle energy fluxes can invert when the particle inertia exceeds a certain threshold. These results significantly advance our understanding of dispersion problems, and lead to new capabilities for predicting the effect of inertia on the rate at which particles spread out and mix together in turbulence, and the rate at which they collide.

public 01:39:58
public 01:24:45

Bryan J. Glaz : The Quasi-Periodic Intermittency Attractor and a Fractional Calculus Perspective of Generalized Spectral Decompositions for Nonlinear Dynamical Systems

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Complex, nonlinear dynamical systems are pervasive across many Army relevant scientific disciplines, including turbulence, robotics, and reconfigurable active matter. Typically, our engineering objectives are to control the dynamics. However, our inability to achieve these objectives for a variety of high-dimensional dynamical systems is due to a lack of mathematical tools to describe underlying salient, particularly when it comes to control of such systems. This talk focuses on the Koopman theoretic based spectral decomposition perspective for extracting these features.
In the first part of the talk, we demonstrate how external forcing (e.g. control) can be accounted for in the form of a parametric term added to the Koopman operator of the unforced system. By using the simple fluid dynamics example of streamwise oscillating flow over a cylinder, we establish an analogy with parametrically excited Hopf bifurcations. Quite unexpectedly, we happened upon a peculiar phenomenon that is not quite chaotic, not quite quasi-periodic, and not quite intermittent. We establish the theoretical underpinnings for this phenomenon, that we name Quasi-periodic Intermittency and we discuss the implications across a variety of physical systems. In the second part of the talk, a fractional calculus perspective of complexity will be introduced to generalize Koopman based spectral decompositions to systems with memory as a first step toward dealing with truly complex systems. The analysis leads to modes whose temporal behavior is anomalous and lacks a characteristic scale. The approach we propose may uncover inherent memory effects that would otherwise be obscured by conventional spectral methods.
The talk will conclude with a discussion of new follow-on research thrusts ranging from control for adaptive, reflexive robotic mobility to self-organized adaptation and reconfiguration of active matter systems. In addition, opportunities for students (undergraduate and graduate) and faculty to engage with the U.S. Army Research Laboratory will be discussed.

public 01:39:58

Stephen Teitel : Shear Banding, Discontinuous Shear Thickening, and Rheological Transitions in Athermally Sheared Frictionless Disks

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Simple models of classical particles, interacting via soft- or hard-core repulsive contact interactions, have been used to model a wide variety of granular and soft-matter materials, such as dry granular particles, foams, emulsions, non-Brownian suspensions, and colloids. Such materials display a variety of complex behaviors when in a state of steady shear driven flow. These include (i) Jamming: where the system transitions from a flowing liquid to a rigid but disordered solid as the particle packing increases; (ii) Shear Banding: where the system becomes spatially inhomogeneous, separating into distinct bands flowing at different sh ear strain rates; (iii) Discontinuous Shear Thickening: where the shear stress jumps discontinuously as the shear strain rate is increased. In this talk we will consider a simple numerical model of athermal soft-core interacting frictionless disks in steady state shear flow. We will show that the mechanism by which energy is dissipated plays a key role in determining the rheology of the system. For a model with a tangential viscous collisional dissipation, but no elastic friction, we will show that as the particle packing increases there is a sharp first order phase transition from a region of Bagnoldian rheology (stress ~ strain-rate^2) to a region of Newtonian rheology (stress ~ strain-rate), that takes place below the jamming transition. In a phase diagram of varying strain-rate and packing fraction (or strain-rate and pressure) this first order rheological phase transition manifests itself as a coexistence region, consisting of coexisting bands of Bagnoldian and Newtonian rheology in mechanical equilibrium with each other. Crossing this coexistence region by increasing the strain-rate at fixed packing, we find that discontinuous shear thickening can result if the strain-rate is varied too rapidly for the system to relax to the true shear-banded steady state. We thus demonstrate that the rheology of simply interacting sheared disks can be considerably more complex than previously realized, and our model suggests a simple mechanism for both the phenomena of shear banding and discontinuous shear thickening in spatially homogeneous systems, without the need to introduce elastic friction.

public 01:39:58

Brenton D. Hoffman : Assessing the Effects of Protein Load on Protein Function in Living Cells

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Cells exist in a complex mechanical environment that is both a source of applied forces and a means of mechanical support. An incomplete understanding of the mechanisms cells use to detect mechanical stimuli, a process termed mechanotransduction, is currently preventing advances in tissue engineering and hindering the understanding of several mechanosensitive disease states. Mechanical stimuli are sensed at focal adhesions (FAs), complex dynamic structures comprised of several hundred types of proteins that mediate physical connections between the extracellular matrix and the cytoskeleton. Detection of mechanical cues is thought to be mediated by mechanically-induced changes in protein structure, which, in elegant in vitro single molecule experiments, have been shown to induce new biochemical functions, such as changes in binding affinity as well as the formation of distinct protein-protein interactions. However, the existence and role of these mechanically-induced changes in protein function in living cells are not well understood. To enable the visualization of protein loading, we create Forster Resonance Energy Transfer (FRET)-based tension sensors that emit different colors of light in response to applied forces. The next step in the development of this technology is the use of these sensors to study the effects of mechanical loading on protein functions in living cells. To begin this process, we have refined two commonly used and powerful approaches, Fluorescence Recovery After Photobleaching (FRAP) and fluorescence co-localization to be compatible with FRET-based tension sensors. Initial efforts have focused on the mechanical linker protein vinculin due to its established role in regulating the response of FAs to mechanical loading. These novel techniques reveal that force affects both vinculin turnover as well as its ability to form distinct protein-protein interactions. Further use of these techniques should enable a wide variety of studies in mechanobiology involving different load-bearing proteins, subcellular structures, extracellular contexts, and cellular functions.

public 01:29:47

John Dolbow : On the Surfactant-Driven Fracture of Particulate Rafts

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Over the past decade, much attention has focused on the behavior of hydrophobic particles at interfaces. These systems are of interest to scientists and engineers, for example, due to their potential for stabilizing drops and emulsions via jamming. This seminar will focus on the behavior of particulate 'rafts' that form when a monolayer of particles are placed at an air- liquid interface. The particles interact with the underlying fluid to form a quasi two-dimensional solid. Such particulate rafts can support both tension and compression, and they buckle under sufficiently large compressive loads. When a drop of surfactant is introduced into the system, fracture networks develop in the rafts. The fracture process exhibits features observed in other elastic systems, such as crack kinking, crack branching, and crack arrest. Moreover, there is a clear coupling between the praft fracture and the diffusion of the surfactant on the surface and through the 'porous' liquid-particle monolayer. As such, one can draw analogies between this system and others where crack growth interacts with fluid flow or mass transport. The seminar will present recent work in modeling the diffusion of surfactant into particle raft systems and the resulting formation of fracture networks. We will present both discrete models that track the motion of individual particles, as well as a new continuum model for poro-chemo-elasticity. Results that reproduce some of the quantitative and qualitative aspects of recent experimental studies of these systems will also be shown.

public 01:34:47

Emanuela Del Gado : Gelation and densification of cement hydrates: a soft matter in construction

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5-8 % of the global human CO2 production comes from the production of cement, concrete main binder. The material strength emerges through the development, once in contact with water, of calcium-silicate-hydrate (C-S-H) gels that literally glue together the final compound. Current industrial research aims at exploring alternative and more environmentally friendly chemical compositions while enhancing rheology and mechanics, to overcome the many technological challenges and guarantee concrete standards. Identifying the fundamental mechanisms that control the gel properties at the early stages of hydration and setting is crucial, although challenging, because of far-from-equilibrium conditions, closely intertwined to the evolution of the chemical environment, that are a hallmark of cement hydration.
I will discuss a recently developed statistical physics approach, which allows us to investigate the gel formation under the out-of-equilibrium conditions typical of cement hydration and the role of the nano-scale structure in C-S-H mechanics upon hardening. Our approach, combining Monte Carlo and Molecular Dynamics simulations, unveils for the first time how some distinctive features of the kinetics of cement hydration can be related to the nano-scale effective interactions and to the changes in the morphology of the gels. The novel emerging picture is that the changes of the physico-chemical environment, which dictate the evolution of the effective interactions, specifically favor the gel formation and its continuous densification. Our findings provide new handles to design properties of this complex material and an extensive comparison of numerical findings for the hardened paste with experiments ranging from SANS, SEM, adsorption/desorption of N2 and water to nano-indentation provide new, fundamental insights into the microscopic origin of the properties measured.
K. Ioannidou, R.J.-M. Pellenq and E. Del Gado Controlling local packing and growth in calcium-silicate-hydrate gels , Soft Matter 10, 1121 (2014)
E. Del Gado, K. Ioannidou, E. Masoero, A. Baronnet, R. J.-M. Pellenq, F. J. Ulm and S. Yip, A soft matter in construction - Statistical physics approachfor formation and mechanics of C--S--H gels in cement, Eur. Phys. J. - ST 223, 2285 (2014).
K. Ioannidou, K.J. Krakowiak, M. Bauchy, C.G. Hoover, E. Masoero, S. Yip, F.-J. Ulm, P. Levitz, R.J.-M. Pellenq and E. Del Gado, The mesoscale textureof cement hydrates , PNAS 113, 2029 (2016)**
K. Ioannidou, M. Kanduc, L. Li, D. Frenkel, J. Dobnikar and E. Del Gado, The crucial effect of early-stage gelation on the mechanical properties of cement hydrates , under review

public 01:29:47

Marija Vucelja : A glass transition in population genetics: Emergence of clones in populations

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The fields of evolution and population genetics are undergoing a renaissance, due to the abundance of sequencing data. On the other hand, the existing theories are often unable to explain the experimental findings. It is not clear what sets the time scales of evolution, whether for antibiotic resistance, an emergence of new animal species, or the diversification of life. The emerging picture of genetic evolution is that of a strongly interacting stochastic system with large numbers of components far from equilibrium. In this talk, I plan to focus on the clone competition and discuss the diversity of a random population that undergoes selection and recombination (sexual reproduction). Recombination reshuffles genetic material while selection amplifies the fittest genotypes. If recombination is more rapid than selection, a population consists of a diverse mixture of many genotypes, as is observed in many populations. In the opposite regime, selection can amplify individual genotypes into large clones, and the population reaches the so-called "clonal condensation". I hope to convince you that our work provides a qualitative explanation of clonal condensation. I will point out the similarity between clonal condensation and the freezing transition in the Random Energy Model of spin glasses. I will conclude with a summary of our present understanding of the clonal condensation phenomena and describe future directions and connections to statistical physics.

public 14:51

Robert Ziff : Thresholds and correlations in percolation processes

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